Behavior-related Research
Laboratory of Cellular and Molecular Regulation,
National Institute of Mental Health,
National Institutes of Health
PI: Dr. Miles Herkenham
Worked with Dr. Herkenham and his staff; provided
research support in form of microarray experiment
planning ( Affymetrix ), microarray data analysis ( R ),
pathway, function, network analysis ( Ingenuity ),
promoter modeling ( Genomatix ), and results
interpretation.
Publication(s): Yes
Brain, Behavior, and Immunity, 2012 ( PMID: TBA )
Experimental Therapeutics Branch,
Unit on Genetic Basis for Mood and Anxiety,
PI: Dr. Sevilla Detera-Wadleigh
Worked with Dr. Detera-Wadleigh and her staff;
provided research support in form of microarray
( Agilent ) data analysis ( R ).
Publication(s): None at this time.
Development-related Research
Laboratory of Molecular Medicine and Neuroscience,
National Institute of Neurological Disorders and Stroke,
PI: Dr. Eugene Major
Worked with Dr. Major and his staff; provided
and pathway, function, network analysis ( Ingenuity ).
Section of Developmental Genetics,
PI: Dr. Lynn Hudson
Worked with Dr. Hudson and her staff; provided
pathway, function, network analysis ( Ingenuity ,
Genespring ), miRNA target analysis ( TargetScan ),
results interpretation, and manuscript muster.
Journal Neuroscience, 2008 ( PMID 18987208 )
Laboratory of Molecular Biology,
PI: Dr. Ronald McKay
Worked with Dr. McKay and his staff; provided
planning ( Affymetrix , Agilent ), microarray data analysis
( R ), pathway, function, network analysis ( Ingenuity ,
Genespring ), results interpretation, database launch,
and manuscript muster.
Disease-related Research
Lombardi Comprehensive Cancer Center,
Georgetown University
PI: Dr. Vicente Notario
Worked with Dr. Notario; provided research support
in form of microarray ( Affymetrix ) data analysis ( R ),
pathway, function, network analysis ( Ingenuity ), results
interpretation, and manuscript muster.
Oncology Section,
Department of Veterans Affairs Medical Center
PI: Dr. Robert Wadleigh
Worked with Dr. Wadleigh; provided research support
Genespring ), results interpretation, and manuscript
muster.
Developmental and Metabolic Neurology Branch,
PI: Dr. Roscoe Brady
Worked with Dr. Brady and his staff; provided
Surgical and Molecular Neuro-Oncology Unit,
PI: Dr. John Park
Worked with Dr. Park and his staff; provided
research support in form of microarray ( Affymetrix ),
data analysis ( R ), results interpretation, and manuscript
Cancer Research, 2007 ( PMID 17804706 )
Viral Immunology Section,
PI: Dr. Steve Jacobson
Worked with Dr. Jacobson and his staff; provided
research support in form of microarray ( Affymetrix )
data analysis ( R ), pathway, function enrichment
analysis ( Ingenuity ), protein interaction network
analysis ( Rspider , Cytoscape ), HLA association
analysis ( R ), results interpretation, and manuscript
Stroke Neuroscience Unit,
PI: Dr. Alison Baird
Worked with Dr. Baird and her staff; provided
data analysis ( R ), pathway, function, network analysis
( Ingenuity ), diagnostic modeling ( R ), results
ProQuest, 2009 ( available here )
Neurobiology Neurodegeneration & Repair Laboratory,
National Eye Institute,
PI: Dr. Anand Swaroop
Worked with Dr. Swaroop and his staff; provided
( Ingenuity ), promoter modeling ( Genomatix ), Chip::Seq
Analysis ( MACS ), protein structure prediction and
permutation ( SWISS-MODEL , WHAT IF , DeepView ,
POV-ray ), results interpretation, and manuscript
Am J Hum Genet., 2009 ( PMID 19520207 )
Neurosurgical Biology and Therapeutics Unit,
PI: Dr. Russel Lonser
Worked with Dr. Lonser's staff; provided
( Ingenuity ), results interpretation, and manuscript
Methods-related Research
PI: Dr. Larry Mertz, Gene Logic, Inc.
Presentation, Poster:
AACR 2005 ( click here )
ISMB 2005 ( click here )
PI: Dr. Yang Fann, NINDS/NIH
Poster(s):
NIH 2008 ( click here )
ISMB 2008 ( click here )
Poster:
PI: Dr. Mark Hallet, NINDS/NIH
PI: Dr. Lynn Hudson, NINDS/NIH
SON 2008 ( click here )
PI: Dr. Jeff Cossman, Gene Logic, Inc.
ASCO 2004 ( click here )
ISMB 2010 ( click here )
NIH 2007 ( click here )
NIH 2009 ( click here )
PI: Dr. Donna Mendrick, Gene Logic, Inc.
SOT 2003 ( click here )
PI: Dr. Lee Eiden
Pathogen-related Research
Bioinformatics and Computational Biology Department,
George Mason University
PI: Dr. Curtis Jamison
Worked with Dr. Jamison; provided research support in
form of custom cDNA microarray data analysis ( R ).
Section of Infections of the Nervous System,
PI: Dr. Avindra Nath
Worked with Dr. Nath and his staff; provided
support in form of VATCH discovery ( BLAST ) and
conserved expressed sequence discovery
( CLUSTALW2 ) for antisense oligo design.
support in form of antibody profile modeling ( R ) for
diagnosis, prognosis.
Blood, 2012 (PMID: TBA)
research support in form of antibody profile modeling
( R ) for diagnosis, prognosis (i.e., PML).
Viral Immunology and Intravital Imaging Unit,
PI: Dr. Dorian McGavern
Worked with Dr. McGavern and his staff; provided
analysis ( Ingenuity ), and protein interaction network
analysis ( Rspider , Cytoscape ).
Systems-related Research
Neuroimmunology Branch,
PI: Dr. Henry McFarland
Worked with Dr. McFarland and his staff; provided
research support in form of microarray ( Affymetrix ) data
analysis ( R ), pathway, function, network analysis
PI: Dr. John Hallenbeck
Worked with Dr. Hallenbecks's staff; provided research
support in form of microarray ( Affymetrix ) data analysis
( R ), pathway, function, network analysis ( Ingenuity ),
PLoS ONE, 2011 ( PMID: 21701687 )
Neuroimmunological Diseases Unit,
PI: Dr. Bibi Bilikova
Worked with Dr. Bilikova and her staff; provided
( Ingenuity ), and results interpretation.
Genomics Division,
Gene Logic, Inc.
PI: Dr. Larry Mertz
Worked with Dr. Mertz and his staff; provided research
( R ), pathway analysis ( R ), and results interpretation.
Laboratory of Functional and Molecular Imaging,
PI: Dr. Alan Koretsky
Worked with Dr. Koretsky and his staff; provided
research support in form of mRNA and miRNA
microarray experiment planning ( Affymetrix ), mRNA
and miRNA microarray data analysis ( R ), pathway,
function, network analysis ( Ingenuity ), miRNA target
analysis ( TargetScan ), RNA::Seq experiment
planning (Illumina), RNA::Seq analysis ( CLC Bio
Workbench , Galaxy ), results interpretation,
pathway, function, network analysis ( DAVID , Ingenuity ,
Multiple Sclerosis, 2010 ( PMID: 20086029 )
Molecular Neuroscience Section,
PI: Dr. Hal Gainer
Worked with Dr. Gainer and his staff; provided
research support in form of Q-RT-PCR analysis ( R ),
promoter modeling ( Genomatix ), results interpretation,
Clinical Investigations Section,
PI: Dr. John Hallenback
Worked with Dr. Hallenback and his staff; provided
research support in form of miRNA target analysis
( TargetScan ), results interpretation, and experiment
planning.
Publications
Oskvig DB, Elkahloun AG, Johnson KR, Phillips TM,
Herkenham M. "Maternal immune activation by LPS
selectively alters specific gene expression profiles of
interneuron migration and oxidative stress in the fetus
without triggering a fetal immune response. Brain,
Behavior, and Immunity. 2012;26(1). Epub Jan 30.
[PMID: TBA]
Li X, Johnson KR, Bryant M, Elkahloun AG, Amar M,
Remaley AT, De Silva R, Hallenbeck JM, Quandt JA.
"Intranasal Delivery of E-Selectin Reduces
Atherosclerosis in ApoE-/- Mice". PLoS One.
2011;6(6):e20620. Epub 2011 Jun 20.
[ PMID: 21701687 ]
Lovas G, Nielsen JA, Johnson KR, Hudson LD.
"Alterations in neuronal gene expression profiles in
response to experimental demyelination and axonal
transection". Multiple Sclerosis. 2010 Mar;16(3):303-
16. Epub 2010 Jan 19.
[ PMID: 20086029 ]
Friedman JS, Ray JW, Waseem N, Johnson K,
Brooks MJ, Hugosson T, Breuer D, Branham KE,
Krauth DS, Bowne SJ, Sullivan LS, Ponjavic V,
Gränse L, Khanna R, Trager EH, Gieser LM,
Hughbanks-Wheaton D, Cojocaru RI, Ghiasvand NM,
Chakarova CF, Abrahamson M, Göring HH,
Webster AR, Birch DG, Abecasis GR, Fann Y,
Bhattacharya SS, Daiger SP, Heckenlively JR,
Andréasson S, Swaroop A. "Mutations in a BTB-
Kelch protein, KLHL7, cause autosomal-dominant
retinitis pigmentosa." Am J Hum Genet., Jun 2009,
84(6):792-800. [ PMID: 19520207 ]
Lau P, Verrier J, Nielsen J, Johnson K, Notterpek L,
Hudson L. "Identification of dynamically regulated
microRNA and mRNA networks in developing
oligodendrocytes." Journal of Neuroscience, Nov
2008, 28(45):11720-30. [ PMID: 18987208 ]
Jarboe J, Johnson K, Choi Y, Lonser R, Park J.
"Expression of interleukin-13 receptor alpha2 in
glioblastoma multiforme: implications for targeted
therapies". Cancer Research, Sep 2007,
1;67(17):7983-6. [ PMID: 17804706 ]
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